PrimeKG
Precision medicine knowledge graph integrating 20 sources for 17k diseases.
Composite
91.9
Experimental validation
Retrospective
Stages
Disease ModelingTarget ID
Modalities
cross-modality
Task types
knowledge-graphdrug-repurposing
Size
nodes: 129,375
edges: 8,100,498
diseases: 17,080
edges: 8,100,498
diseases: 17,080
License
MIT
First release
2023-03
Last updated
2025-02
Official site
Leaderboard
→ leaderboard
Dataset
→ dataset
Code / GitHub
HuggingFace
→ HF
Paper
Building a knowledge graph to enable precision medicine · Chandak P, Huang K, Zitnik M · 2023 · paper · doi:10.1038/s41597-023-01960-3 · 320 citations
Flags
none
Experts
Groups
Hosted by
Related benchmarks
Rubric (7-criterion)
rigor
5
coverage
5
maintenance
4
adoption
4
quality
5
accessibility
5
industry_relevance
4
Notes
Modern, well-engineered KG; strong for GNN drug repurposing.