CPTAC Proteogenomic Benchmarks
Proteogenomic benchmarks across 10 tumor types — drives DREAM proteogenomic challenges.
Composite
80.8
Experimental validation
Clinical
Stages
Disease ModelingTarget IDPhase II
Modalities
cross-modality
Task types
biomarker-discovery
Size
samples: 1,600
tumor_types: 10
omics_layers: 6
tumor_types: 10
omics_layers: 6
License
dbGaP / public
First release
2011
Last updated
2025-03
Official site
Leaderboard
→ leaderboard
Dataset
Code / GitHub
HuggingFace
→ HF
Paper
Proteogenomic Characterization of Cancer Types (CPTAC overview) · Zhang B, Wang J, Wang X, et al. · 2014 · paper · doi:10.1038/nature13438 · 1,200 citations
Flags
none
Experts
—
Groups
Hosted by
Related benchmarks
Rubric (7-criterion)
rigor
5
coverage
3
maintenance
4
adoption
4
quality
5
accessibility
3
industry_relevance
4
Notes
Deep integrative oncology data.